3D structure

PDB id
8R8M (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
C(OMU)GUUCG
Length
7 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8R8M_095 not in the Motif Atlas
Homologous match to HL_5J7L_195
Geometric discrepancy: 0.0681
The information below is about HL_5J7L_195
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_30068.2
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
15

Unit IDs

8R8M|1|a|C|2551
8R8M|1|a|OMU|2552
8R8M|1|a|G|2553
8R8M|1|a|U|2554
8R8M|1|a|U|2555
8R8M|1|a|C|2556
8R8M|1|a|G|2557

Current chains

Chain a
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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