HL_8R8M_104
3D structure
- PDB id
- 8R8M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- GUCUC
- Length
- 5 nucleotides
- Bulged bases
- 8R8M|1|b|U|87, 8R8M|1|b|U|89
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8R8M_104 not in the Motif Atlas
- Homologous match to HL_5J7L_204
- Geometric discrepancy: 0.09
- The information below is about HL_5J7L_204
- Detailed Annotation
- Mini UNCG
- Broad Annotation
- No text annotation
- Motif group
- HL_48778.2
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 46
Unit IDs
8R8M|1|b|G|86
8R8M|1|b|U|87
8R8M|1|b|C|88
8R8M|1|b|U|89
8R8M|1|b|C|90
Current chains
- Chain b
- 5S ribosomal RNA
Nearby chains
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain l
- Large ribosomal subunit protein uL16
Coloring options: