3D structure

PDB id
8R8M (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
GUCUC
Length
5 nucleotides
Bulged bases
8R8M|1|b|U|87, 8R8M|1|b|U|89
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8R8M_104 not in the Motif Atlas
Homologous match to HL_5J7L_204
Geometric discrepancy: 0.09
The information below is about HL_5J7L_204
Detailed Annotation
Mini UNCG
Broad Annotation
No text annotation
Motif group
HL_48778.2
Basepair signature
cWW-F
Number of instances in this motif group
46

Unit IDs

8R8M|1|b|G|86
8R8M|1|b|U|87
8R8M|1|b|C|88
8R8M|1|b|U|89
8R8M|1|b|C|90

Current chains

Chain b
5S ribosomal RNA

Nearby chains

Chain a
Large subunit ribosomal RNA; LSU rRNA
Chain l
Large ribosomal subunit protein uL16

Coloring options:


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