HL_8R8M_105

3D structure

PDB id

8R8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AAGUUAAUACCUU

Length

13 nucleotides

Bulged bases

8R8M|1|A|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8R8M_105 not in the Motif Atlas

Geometric match to HL_5TBW_226

Geometric discrepancy: 0.3551

The information below is about HL_5TBW_226

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59342.2

Basepair signature

cWW-F-F-F-F-cWW-F-F

Number of instances in this motif group

5

Unit IDs

8R8M|1|A|A|460
8R8M|1|A|A|461
8R8M|1|A|G|462
8R8M|1|A|U|463
8R8M|1|A|U|464
8R8M|1|A|A|465
8R8M|1|A|A|466
8R8M|1|A|U|467
8R8M|1|A|A|468
8R8M|1|A|C|469
8R8M|1|A|C|470
8R8M|1|A|U|471
8R8M|1|A|U|472

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S16