HL_8R8M_109
3D structure
- PDB id
- 8R8M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- GUCGGACAU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8R8M_109 not in the Motif Atlas
- Homologous match to HL_5J7L_219
- Geometric discrepancy: 0.1507
- The information below is about HL_5J7L_219
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50860.2
- Basepair signature
- cWW-F-cWH-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
8R8M|1|a|G|2304
8R8M|1|a|U|2305
8R8M|1|a|C|2306
8R8M|1|a|G|2307
8R8M|1|a|G|2308
8R8M|1|a|A|2309
8R8M|1|a|C|2310
8R8M|1|a|A|2311
8R8M|1|a|U|2312
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain Y
- Transfer RNA; tRNA
- Chain f
- Large ribosomal subunit protein uL5
Coloring options: