HL_8RCL_057

3D structure

PDB id

8RCL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Non-rotated disome interface class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

UGCAAUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RCL_057 not in the Motif Atlas

Homologous match to HL_5J7L_189

Geometric discrepancy: 0.0939

The information below is about HL_5J7L_189

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

8RCL|1|72|U|2324
8RCL|1|72|G|2325
8RCL|1|72|C|2326
8RCL|1|72|A|2327
8RCL|1|72|A|2328
8RCL|1|72|U|2329
8RCL|1|72|G|2330
8RCL|1|72|G|2331

Current chains

Chain 72

23S ribosomal RNA

Nearby chains

Chain W

Transfer RNA; tRNA

Chain h2

50S ribosomal protein L16

Chain z2

50S ribosomal protein L27