HL_8RCS_155

3D structure

PDB id

8RCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Rotated disome interface class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.46 Å

Loop

Sequence

(PSU)UGAA(MIA)A

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, MIA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RCS_155 not in the Motif Atlas

Geometric match to HL_5J7L_211

Geometric discrepancy: 0.3664

The information below is about HL_5J7L_211

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8RCS|1|W1|PSU|32
8RCS|1|W1|U|33
8RCS|1|W1|G|34
8RCS|1|W1|A|35
8RCS|1|W1|A|36
8RCS|1|W1|MIA|37
8RCS|1|W1|A|38

Current chains

Chain W1

tRNA-Phe (P/E-site)

Nearby chains

Chain A1

Small subunit ribosomal RNA; SSU rRNA

Chain I1

Small ribosomal subunit protein uS9

Chain V2

messenger RNA