HL_8RCT_138

3D structure

PDB id

8RCT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (Rotated disome interface class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.32 Å

Loop

Sequence

U(PSU)UCCA(MIA)AA

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, MIA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RCT_138 not in the Motif Atlas

Homologous match to HL_6ORD_036

Geometric discrepancy: 0.3196

The information below is about HL_6ORD_036

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_06059.2

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

47

Unit IDs

8RCT|1|W|U|31
8RCT|1|W|PSU|32
8RCT|1|W|U|33
8RCT|1|W|C|34
8RCT|1|W|C|35
8RCT|1|W|A|36
8RCT|1|W|MIA|37
8RCT|1|W|A|38
8RCT|1|W|A|39

Current chains

Chain W

tRNA-Trp (P/E-site)

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain I2

Small ribosomal subunit protein uS9

Chain V2

messenger RNA