HL_8RD8_004

3D structure

PDB id

8RD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

GCGGCAAUAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RD8_004 not in the Motif Atlas

Homologous match to HL_7A0S_002

Geometric discrepancy: 0.591

The information below is about HL_7A0S_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_76590.1

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8RD8|1|Z2|G|93
8RD8|1|Z2|C|94
8RD8|1|Z2|G|95
8RD8|1|Z2|G|96
8RD8|1|Z2|C|97
8RD8|1|Z2|A|98
8RD8|1|Z2|A|99
8RD8|1|Z2|U|100
8RD8|1|Z2|A|101
8RD8|1|Z2|U|102
8RD8|1|Z2|C|103

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain Sn

Large ribosomal subunit protein uL23

Chain TI

Large ribosomal subunit protein uL24

Chain XE

Large ribosomal subunit protein uL29