HL_8RD8_011

3D structure

PDB id

8RD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

CGUGGGAAAG

Length

10 nucleotides

Bulged bases

8RD8|1|Z2|A|298

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RD8_011 not in the Motif Atlas

Geometric match to HL_4V88_219

Geometric discrepancy: 0.2958

The information below is about HL_4V88_219

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_03273.1

Basepair signature

cWW-F-F-tWH-F-F-F

Number of instances in this motif group

3

Unit IDs

8RD8|1|Z2|C|291
8RD8|1|Z2|G|292
8RD8|1|Z2|U|293
8RD8|1|Z2|G|294
8RD8|1|Z2|G|295
8RD8|1|Z2|G|296
8RD8|1|Z2|A|297
8RD8|1|Z2|A|298
8RD8|1|Z2|A|299
8RD8|1|Z2|G|300

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain TI

Large ribosomal subunit protein uL24