HL_8RD8_013

3D structure

PDB id

8RD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

GUGAUAGUC

Length

9 nucleotides

Bulged bases

8RD8|1|Z2|G|316, 8RD8|1|Z2|A|317, 8RD8|1|Z2|U|318

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RD8_013 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.0994

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

8RD8|1|Z2|G|314
8RD8|1|Z2|U|315
8RD8|1|Z2|G|316
8RD8|1|Z2|A|317
8RD8|1|Z2|U|318
8RD8|1|Z2|A|319
8RD8|1|Z2|G|320
8RD8|1|Z2|U|321
8RD8|1|Z2|C|322

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain E9

Large ribosomal subunit protein uL4

Chain TI

Large ribosomal subunit protein uL24