HL_8RD8_028

3D structure

PDB id

8RD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

UGCUAACG

Length

8 nucleotides

Bulged bases

8RD8|1|Z2|U|942, 8RD8|1|Z2|C|945

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RD8_028 not in the Motif Atlas

Homologous match to HL_4WF9_027

Geometric discrepancy: 0.1076

The information below is about HL_4WF9_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

8RD8|1|Z2|U|939
8RD8|1|Z2|G|940
8RD8|1|Z2|C|941
8RD8|1|Z2|U|942
8RD8|1|Z2|A|943
8RD8|1|Z2|A|944
8RD8|1|Z2|C|945
8RD8|1|Z2|G|946

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain D8

5S ribosomal RNA; 5S rRNA

Chain Lg

Large ribosomal subunit protein uL16