HL_8RD8_031
3D structure
- PDB id
- 8RD8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.62 Å
Loop
- Sequence
- CGUAAUAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8RD8_031 not in the Motif Atlas
- Homologous match to HL_6PRV_002
- Geometric discrepancy: 0.0977
- The information below is about HL_6PRV_002
- Detailed Annotation
- GNRA with tandem sheared
- Broad Annotation
- No text annotation
- Motif group
- HL_98423.4
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 16
Unit IDs
8RD8|1|Z2|C|1076
8RD8|1|Z2|G|1077
8RD8|1|Z2|U|1078
8RD8|1|Z2|A|1079
8RD8|1|Z2|A|1080
8RD8|1|Z2|U|1081
8RD8|1|Z2|A|1082
8RD8|1|Z2|G|1083
Current chains
- Chain Z2
- 23S rRNA
Nearby chains
- Chain B
- Methyl-accepting chemotaxis protein
- Chain GR
- Large ribosomal subunit protein uL6
- Chain H
- Elongation factor Tu
- Chain ep
- Large ribosomal subunit protein bL36
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