HL_8RD8_038

3D structure

PDB id

8RD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

CGUUGGUUG

Length

9 nucleotides

Bulged bases

8RD8|1|Z2|U|1437, 8RD8|1|Z2|U|1438

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RD8_038 not in the Motif Atlas

Geometric match to HL_5J7L_169

Geometric discrepancy: 0.0688

The information below is about HL_5J7L_169

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_22622.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8RD8|1|Z2|C|1435
8RD8|1|Z2|G|1436
8RD8|1|Z2|U|1437
8RD8|1|Z2|U|1438
8RD8|1|Z2|G|1439
8RD8|1|Z2|G|1440
8RD8|1|Z2|U|1441
8RD8|1|Z2|U|1442
8RD8|1|Z2|G|1443

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain MB

Large ribosomal subunit protein bL17