HL_8RD8_047
3D structure
- PDB id
- 8RD8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.62 Å
Loop
- Sequence
- UUUAUUAAAAA
- Length
- 11 nucleotides
- Bulged bases
- 8RD8|1|Z2|A|1766, 8RD8|1|Z2|U|1767, 8RD8|1|Z2|U|1768, 8RD8|1|Z2|A|1772
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8RD8_047 not in the Motif Atlas
- Homologous match to HL_5J7L_178
- Geometric discrepancy: 0.0661
- The information below is about HL_5J7L_178
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01962.2
- Basepair signature
- cWW-tWH-tWH-F
- Number of instances in this motif group
- 6
Unit IDs
8RD8|1|Z2|U|1763
8RD8|1|Z2|U|1764
8RD8|1|Z2|U|1765
8RD8|1|Z2|A|1766
8RD8|1|Z2|U|1767
8RD8|1|Z2|U|1768
8RD8|1|Z2|A|1769
8RD8|1|Z2|A|1770
8RD8|1|Z2|A|1771
8RD8|1|Z2|A|1772
8RD8|1|Z2|A|1773
Current chains
- Chain Z2
- 23S rRNA
Nearby chains
- Chain Ba
- Large ribosomal subunit protein bL34
- Chain Cl
- Large ribosomal subunit protein uL2
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