HL_8RD8_050
3D structure
- PDB id
- 8RD8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.62 Å
Loop
- Sequence
- GUAACUAUAAC
- Length
- 11 nucleotides
- Bulged bases
- 8RD8|1|Z2|A|1899
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8RD8_050 not in the Motif Atlas
- Geometric match to HL_5TBW_049
- Geometric discrepancy: 0.169
- The information below is about HL_5TBW_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_84702.1
- Basepair signature
- cWW-F-F-tHW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8RD8|1|Z2|G|1896
8RD8|1|Z2|U|1897
8RD8|1|Z2|A|1898
8RD8|1|Z2|A|1899
8RD8|1|Z2|C|1900
8RD8|1|Z2|U|1901
8RD8|1|Z2|A|1902
8RD8|1|Z2|U|1903
8RD8|1|Z2|A|1904
8RD8|1|Z2|A|1905
8RD8|1|Z2|C|1906
Current chains
- Chain Z2
- 23S rRNA
Nearby chains
- Chain B
- Methyl-accepting chemotaxis protein
- Chain D
- 30S ribosomal protein S30
- Chain iN
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: