HL_8RD8_056

3D structure

PDB id

8RD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

8RD8|1|Z2|A|2251, 8RD8|1|Z2|C|2258

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RD8_056 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0764

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

8RD8|1|Z2|C|2247
8RD8|1|Z2|U|2248
8RD8|1|Z2|A|2249
8RD8|1|Z2|A|2250
8RD8|1|Z2|A|2251
8RD8|1|Z2|G|2252
8RD8|1|Z2|A|2253
8RD8|1|Z2|G|2254
8RD8|1|Z2|U|2255
8RD8|1|Z2|A|2256
8RD8|1|Z2|A|2257
8RD8|1|Z2|C|2258
8RD8|1|Z2|G|2259

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain Lg

Large ribosomal subunit protein uL16

Chain VH

Large ribosomal subunit protein bL27