HL_8RD8_061

3D structure

PDB id

8RD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

UGUAUGGAAG

Length

10 nucleotides

Bulged bases

8RD8|1|Z2|U|2389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RD8_061 not in the Motif Atlas

Homologous match to HL_5J7L_192

Geometric discrepancy: 0.0491

The information below is about HL_5J7L_192

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8RD8|1|Z2|U|2387
8RD8|1|Z2|G|2388
8RD8|1|Z2|U|2389
8RD8|1|Z2|A|2390
8RD8|1|Z2|U|2391
8RD8|1|Z2|G|2392
8RD8|1|Z2|G|2393
8RD8|1|Z2|A|2394
8RD8|1|Z2|A|2395
8RD8|1|Z2|G|2396

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain Kd

Large ribosomal subunit protein uL15