HL_8RD8_063

3D structure

PDB id

8RD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

UGAAGCAG

Length

8 nucleotides

Bulged bases

8RD8|1|Z2|G|2512

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RD8_063 not in the Motif Atlas

Homologous match to HL_5J7L_194

Geometric discrepancy: 0.1011

The information below is about HL_5J7L_194

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

8RD8|1|Z2|U|2511
8RD8|1|Z2|G|2512
8RD8|1|Z2|A|2513
8RD8|1|Z2|A|2514
8RD8|1|Z2|G|2515
8RD8|1|Z2|C|2516
8RD8|1|Z2|A|2517
8RD8|1|Z2|G|2518

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain B

Methyl-accepting chemotaxis protein

Chain GR

Large ribosomal subunit protein uL6

Chain ep

Large ribosomal subunit protein bL36