HL_8RD8_070

3D structure

PDB id

8RD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

AGCGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RD8_070 not in the Motif Atlas

Homologous match to HL_5J7L_202

Geometric discrepancy: 0.0727

The information below is about HL_5J7L_202

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8RD8|1|Z2|A|2822
8RD8|1|Z2|G|2823
8RD8|1|Z2|C|2824
8RD8|1|Z2|G|2825
8RD8|1|Z2|A|2826
8RD8|1|Z2|U|2827

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain Oi

Large ribosomal subunit protein bL19