HL_8RD8_074

3D structure

PDB id

8RD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

8RD8|1|iN|A|233

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RD8_074 not in the Motif Atlas

Geometric match to HL_2CZJ_007

Geometric discrepancy: 0.3114

The information below is about HL_2CZJ_007

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_23696.2

Basepair signature

cWW-F-F

Number of instances in this motif group

8

Unit IDs

8RD8|1|iN|C|231
8RD8|1|iN|U|232
8RD8|1|iN|A|233
8RD8|1|iN|C|234
8RD8|1|iN|G|235
8RD8|1|iN|G|236

Current chains

Chain iN

16S rRNA

Nearby chains

Chain To

Small ribosomal subunit protein bS20