HL_8RD8_077

3D structure

PDB id

8RD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

GACUGAGACACGGC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RD8_077 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.0873

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8RD8|1|iN|G|363
8RD8|1|iN|A|364
8RD8|1|iN|C|365
8RD8|1|iN|U|366
8RD8|1|iN|G|367
8RD8|1|iN|A|368
8RD8|1|iN|G|369
8RD8|1|iN|A|370
8RD8|1|iN|C|371
8RD8|1|iN|A|372
8RD8|1|iN|C|373
8RD8|1|iN|G|374
8RD8|1|iN|G|375
8RD8|1|iN|C|376

Current chains

Chain iN

16S rRNA

Nearby chains

Chain Pj

Small ribosomal subunit protein bS16

Chain To

Small ribosomal subunit protein bS20