HL_8RD8_078

3D structure

PDB id

8RD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

8RD8|1|iN|A|387

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RD8_078 not in the Motif Atlas

Homologous match to HL_4LFB_009

Geometric discrepancy: 0.0895

The information below is about HL_4LFB_009

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

72

Unit IDs

8RD8|1|iN|C|385
8RD8|1|iN|U|386
8RD8|1|iN|A|387
8RD8|1|iN|C|388
8RD8|1|iN|G|389
8RD8|1|iN|G|390

Current chains

Chain iN

16S rRNA

Nearby chains

Chain H

Elongation factor Tu

Chain Je

Large ribosomal subunit protein uL14

Chain Oi

Large ribosomal subunit protein bL19