HL_8RD8_084
3D structure
- PDB id
- 8RD8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.62 Å
Loop
- Sequence
- CGGUGAAAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8RD8_084 not in the Motif Atlas
- Homologous match to HL_5J7L_015
- Geometric discrepancy: 0.0783
- The information below is about HL_5J7L_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.5
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
8RD8|1|iN|C|733
8RD8|1|iN|G|734
8RD8|1|iN|G|735
8RD8|1|iN|U|736
8RD8|1|iN|G|737
8RD8|1|iN|A|738
8RD8|1|iN|A|739
8RD8|1|iN|A|740
8RD8|1|iN|U|741
8RD8|1|iN|G|742
Current chains
- Chain iN
- 16S rRNA
Nearby chains
- Chain D
- 30S ribosomal protein S30
- Chain GS
- Small ribosomal subunit protein uS7
- Chain KU
- Small ribosomal subunit protein uS11
- Chain NV
- Small ribosomal subunit protein bS21
- Chain Z2
- Large subunit ribosomal RNA; LSU rRNA
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