HL_8RD8_093

3D structure

PDB id

8RD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

8RD8|1|iN|G|1138

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RD8_093 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.0766

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.3

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

22

Unit IDs

8RD8|1|iN|G|1133
8RD8|1|iN|U|1134
8RD8|1|iN|U|1135
8RD8|1|iN|A|1136
8RD8|1|iN|A|1137
8RD8|1|iN|G|1138
8RD8|1|iN|U|1139
8RD8|1|iN|C|1140

Current chains

Chain iN

16S rRNA

Nearby chains

Chain A4

Small ribosomal subunit protein uS2

Chain GS

Small ribosomal subunit protein uS7