HL_8RD8_098
3D structure
- PDB id
- 8RD8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.62 Å
Loop
- Sequence
- GAUCAGAAUGC
- Length
- 11 nucleotides
- Bulged bases
- 8RD8|1|iN|U|1409
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8RD8_098 not in the Motif Atlas
- Homologous match to HL_4LFB_030
- Geometric discrepancy: 0.1066
- The information below is about HL_4LFB_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_86432.1
- Basepair signature
- cWW-tWH-tWH-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8RD8|1|iN|G|1401
8RD8|1|iN|A|1402
8RD8|1|iN|U|1403
8RD8|1|iN|C|1404
8RD8|1|iN|A|1405
8RD8|1|iN|G|1406
8RD8|1|iN|A|1407
8RD8|1|iN|A|1408
8RD8|1|iN|U|1409
8RD8|1|iN|G|1410
8RD8|1|iN|C|1411
Current chains
- Chain iN
- 16S rRNA
Nearby chains
- Chain CT
- Small ribosomal subunit protein uS3
- Chain F
- Small ribosomal subunit protein uS9
- Chain HK
- Small ribosomal subunit protein uS14
- Chain JY
- Small ribosomal subunit protein uS10
- Chain MM
- Small ribosomal subunit protein uS13
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