HL_8RDV_002
3D structure
- PDB id
- 8RDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- UUUCGA
- Length
- 6 nucleotides
- Bulged bases
- 8RDV|1|D8|U|85
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8RDV_002 not in the Motif Atlas
- Geometric match to HL_5D5L_003
- Geometric discrepancy: 0.107
- The information below is about HL_5D5L_003
- Detailed Annotation
- UNCG
- Broad Annotation
- No text annotation
- Motif group
- HL_61337.1
- Basepair signature
- cWW-tSW-F
- Number of instances in this motif group
- 49
Unit IDs
8RDV|1|D8|U|83
8RDV|1|D8|U|84
8RDV|1|D8|U|85
8RDV|1|D8|C|86
8RDV|1|D8|G|87
8RDV|1|D8|A|88
Current chains
- Chain D8
- 5S rRNA
Nearby chains
- Chain Lg
- Large ribosomal subunit protein uL16
- Chain UC
- Large ribosomal subunit protein bL25
- Chain YW
- Large ribosomal subunit protein uL30
- Chain Z2
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: