8RDV Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8RDV_101 | 1/D8/32:46 | No text annotation | homologous HL_9DFE_067 HL_97756.3 | |
| HL_8RDV_001 | 1/D8/36:42 | No text annotation | homologous HL_5J7L_203 NA | |
| HL_8RDV_002 | 1/D8/83:88 | UNCG | geometric HL_5D5L_003 HL_61337.1 | |
| HL_8RDV_003 | 1/Z2/66:75 | No text annotation | homologous HL_5J7L_134 NA | |
| HL_8RDV_004 | 1/Z2/93:103 | tRNA anticodon loop | geometric HL_8H1B_001 HL_46665.1 | |
| HL_8RDV_005 | 1/Z2/129:134 | No text annotation | homologous HL_5J7L_136 NA | |
| HL_8RDV_006 | 1/Z2/143:148 | No text annotation | geometric HL_2Y9H_003 HL_75660.6 | |
| HL_8RDV_008 | 1/Z2/191:198 | No text annotation | homologous HL_4WF9_006 HL_48677.1 | |
| HL_8RDV_009 | 1/Z2/222:227 | No text annotation | homologous HL_4WF9_007 HL_51020.1 | |
| HL_8RDV_010 | 1/Z2/243:249 | No text annotation | homologous HL_5J7L_141 NA | |
| HL_8RDV_011 | 1/Z2/291:300 | No text annotation | geometric HL_8P9A_222 HL_50951.1 | |
| HL_8RDV_012 | 1/Z2/306:310 | No text annotation | homologous HL_5J7L_143 NA | |
| HL_8RDV_013 | 1/Z2/314:322 | T-loop with unstacked turn | homologous HL_7RQB_012 NA | |
| HL_8RDV_014 | 1/Z2/365:375 | No text annotation | homologous HL_5J7L_145 NA | |
| HL_8RDV_015 | 1/Z2/393:400 | Pseudoknot geometry | homologous HL_5J7L_146 NA | |
| HL_8RDV_016 | 1/Z2/445:450 | GNRA | homologous HL_7RQB_015 NA | |
| HL_8RDV_017 | 1/Z2/470:476 | GNRA | homologous HL_5J7L_148 NA | |
| HL_8RDV_018 | 1/Z2/528:533 | No text annotation | homologous HL_7RQB_017 NA | |
| HL_8RDV_019 | 1/Z2/551:560 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_150 NA | |
| HL_8RDV_020 | 1/Z2/596:602 | No text annotation | homologous HL_5J7L_151 NA | |
| HL_8RDV_021 | 1/Z2/614:619 | GNRA | homologous HL_5J7L_152 NA | |
| HL_8RDV_022 | 1/Z2/626:632 | No text annotation | homologous HL_7RQB_021 NA | |
| HL_8RDV_023 | 1/Z2/697:704 | GNRA wlth tandem sheared | homologous HL_5J7L_154 NA | |
| HL_8RDV_024 | 1/Z2/729:738 | No text annotation | geometric HL_4WF9_023 HL_50204.1 | |
| HL_8RDV_025 | 1/Z2/764:770 | No text annotation | homologous HL_5J7L_156 NA | |
| HL_8RDV_026 | 1/Z2/811:816 | No text annotation | homologous HL_7RQB_025 NA | |
| HL_8RDV_028 | 1/Z2/939:946 | GNRA | homologous HL_4WF9_027 HL_34789.1 | |
| HL_8RDV_029 | 1/Z2/962:969 | No text annotation | homologous HL_5J7L_160 NA | |
| HL_8RDV_030 | 1/Z2/1048:1058 | No text annotation | homologous HL_6PRV_001 HL_20174.1 | |
| HL_8RDV_031 | 1/Z2/1076:1083 | GNRA wlth tandem sheared | homologous HL_6PRV_002 HL_98423.1 | |
| HL_8RDV_102 | 1/Z2/1154:1164 | No text annotation | ||
| HL_8RDV_033 | 1/Z2/1206:1211 | GNRA | homologous HL_5J7L_164 NA | |
| HL_8RDV_034 | 1/Z2/1265:1273 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_165 NA | |
| HL_8RDV_035 | 1/Z2/1308:1314 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_166 NA | |
| HL_8RDV_036 | 1/Z2/1347:1352 | GNRA | homologous HL_5J7L_167 NA | |
| HL_8RDV_037 | 1/Z2/1373:1382 | No text annotation | homologous HL_7RQB_036 NA | |
| HL_8RDV_038 | 1/Z2/1435:1443 | Mini UNCG with extended bulge | homologous HL_5J7L_169 NA | |
| HL_8RDV_039 | 1/Z2/1476:1482 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_170 NA | |
| HL_8RDV_041 | 1/Z2/1553:1556 | Mini UNCG | homologous HL_5J7L_172 NA | |
| HL_8RDV_042 | 1/Z2/1600:1607 | No text annotation | homologous HL_7RQB_040 NA | |
| HL_8RDV_043 | 1/Z2/1618:1624 | GNRA | homologous HL_5J7L_174 NA | |
| HL_8RDV_044 | 1/Z2/1679:1684 | No text annotation | homologous HL_7RQB_042 NA | |
| HL_8RDV_046 | 1/Z2/1738:1742 | No text annotation | homologous HL_7RQB_044 NA | |
| HL_8RDV_047 | 1/Z2/1763:1773 | No text annotation | homologous HL_5J7L_178 NA | |
| HL_8RDV_048 | 1/Z2/1792:1797 | GNRA related | homologous HL_5J7L_179 NA | |
| HL_8RDV_049 | 1/Z2/1854:1859 | GNRA variation | homologous HL_5J7L_180 NA | |
| HL_8RDV_050 | 1/Z2/1896:1906 | No text annotation | geometric HL_5TBW_049 NA | |
| HL_8RDV_051 | 1/Z2/1935:1943 | No text annotation | homologous HL_5J7L_182 NA | |
| HL_8RDV_052 | 1/Z2/2013:2022 | No text annotation | homologous HL_4WF9_047 HL_78372.1 | |
| HL_8RDV_103 | 1/Z2/2194:2199 | Pseudoknot geometry | geometric HL_6UFM_005 NA | |
| HL_8RDV_055 | 1/Z2/2231:2239 | No text annotation | homologous HL_7RQB_053 NA | |
| HL_8RDV_056 | 1/Z2/2247:2259 | No text annotation | homologous HL_5J7L_187 NA | |
| HL_8RDV_104 | 1/Z2/2287:2295 | No text annotation | homologous HL_9DFE_198 HL_02452.1 | |
| HL_8RDV_058 | 1/Z2/2307:2314 | Pseudoknot geometry | homologous HL_5J7L_189 NA | |
| HL_8RDV_059 | 1/Z2/2338:2345 | GNRA with extra cWW | homologous HL_4WF9_053 HL_45359.1 | |
| HL_8RDV_060 | 1/Z2/2357:2362 | GNRA | homologous HL_5J7L_191 NA | |
| HL_8RDV_061 | 1/Z2/2387:2396 | No text annotation | homologous HL_5J7L_192 NA | |
| HL_8RDV_062 | 1/Z2/2454:2462 | No text annotation | homologous HL_5J7L_193 NA | |
| HL_8RDV_063 | 1/Z2/2511:2518 | GNRA variation | homologous HL_5J7L_194 NA | |
| HL_8RDV_064 | 1/Z2/2534:2540 | No text annotation | homologous HL_4WF9_058 HL_48677.1 | |
| HL_8RDV_065 | 1/Z2/2577:2582 | GNRA | homologous HL_5J7L_196 NA | |
| HL_8RDV_066 | 1/Z2/2641:2646 | GNRA | homologous HL_5J7L_197 NA | |
| HL_8RDV_067 | 1/Z2/2684:2689 | Ribsomal LSU H95 | homologous HL_5J7L_198 NA | |
| HL_8RDV_068 | 1/Z2/2728:2742 | No text annotation | homologous HL_5J7L_199 NA | |
| HL_8RDV_069 | 1/Z2/2785:2793 | No text annotation | homologous HL_7RQB_068 NA | |
| HL_8RDV_070 | 1/Z2/2822:2827 | GNRA | homologous HL_5J7L_202 NA | |
| HL_8RDV_071 | 1/iN/59:69 | No text annotation | homologous HL_5J7L_001 NA | |
| HL_8RDV_073 | 1/iN/203:208 | GNRA | homologous HL_4LFB_003 HL_34789.1 | |
| HL_8RDV_074 | 1/iN/231:236 | No text annotation | geometric HL_5U3G_001 NA | |
| HL_8RDV_075 | 1/iN/302:310 | GNRA related | homologous HL_5J7L_006 NA | |
| HL_8RDV_076 | 1/iN/339:344 | GNRA | homologous HL_4LFB_007 HL_34789.1 | |
| HL_8RDV_077 | 1/iN/363:376 | No text annotation | homologous HL_5J7L_008 NA | |
| HL_8RDV_078 | 1/iN/385:390 | UNCG | homologous HL_4LFB_009 HL_61337.1 | |
| HL_8RDV_079 | 1/iN/422:427 | GNRA | homologous HL_5J7L_010 NA | |
| HL_8RDV_080 | 1/iN/462:467 | No text annotation | geometric HL_5TBW_018 NA | |
| HL_8RDV_081 | 1/iN/505:513 | GNRA wlth extra near cWW | homologous HL_5J7L_012 NA | |
| HL_8RDV_082 | 1/iN/565:570 | No text annotation | geometric HL_4WF9_003 HL_75660.6 | |
| HL_8RDV_083 | 1/iN/660:666 | GNRA-like with tWH | homologous HL_5J7L_014 NA | |
| HL_8RDV_084 | 1/iN/733:742 | No text annotation | homologous HL_5J7L_015 NA | |
| HL_8RDV_085 | 1/iN/770:775 | GNRA | homologous HL_5J7L_016 NA | |
| HL_8RDV_086 | 1/iN/830:840 | No text annotation | homologous HL_4LFB_017 HL_38491.1 | |
| HL_8RDV_087 | 1/iN/906:911 | GNRA | homologous HL_4LFB_019 HL_34789.1 | |
| HL_8RDV_088 | 1/iN/941:946 | GNRA | homologous HL_4LFB_020 HL_34789.1 | |
| HL_8RDV_089 | 1/iN/1007:1016 | No text annotation | homologous HL_4LFB_021 HL_97521.1 | |
| HL_8RDV_090 | 1/iN/1056:1061 | GNRA | homologous HL_4LFB_022 HL_34789.1 | |
| HL_8RDV_092 | 1/iN/1120:1125 | GNRA | homologous HL_5J7L_023 NA | |
| HL_8RDV_093 | 1/iN/1133:1140 | T-loop related | homologous HL_4LFB_025 HL_63894.1 | |
| HL_8RDV_095 | 1/iN/1210:1216 | GNRA | homologous HL_5J7L_026 NA | |
| HL_8RDV_096 | 1/iN/1310:1315 | GNRA | homologous HL_4LFB_028 HL_34789.1 | |
| HL_8RDV_097 | 1/iN/1359:1368 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_93658.1 | |
| HL_8RDV_098 | 1/iN/1401:1411 | No text annotation | homologous HL_4LFB_030 HL_86432.1 | |
| HL_8RDV_099 | 1/iN/1494:1499 | UNCG | homologous HL_4LFB_031 HL_61337.1 | |
| HL_8RDV_100 | 1/iN/1560:1565 | GNRA variation | geometric HL_4V88_222 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8RDV_007 | No text annotation | ||
| HL_8RDV_027 | No text annotation | ||
| HL_8RDV_032 | No text annotation | ||
| HL_8RDV_040 | No text annotation | ||
| HL_8RDV_045 | No text annotation | ||
| HL_8RDV_053 | No text annotation | ||
| HL_8RDV_054 | No text annotation | ||
| HL_8RDV_057 | No text annotation | ||
| HL_8RDV_072 | No text annotation | ||
| HL_8RDV_091 | No text annotation | ||
| HL_8RDV_094 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8RDV_001 | 1/D8/15:16, 1/D8/63:65 | Major groove intercalation | homologous IL_4WF9_112 IL_14190.1 | |
| IL_8RDV_002 | 1/D8/21:26, 1/D8/54:58 | No text annotation | homologous IL_5J7L_356 NA | |
| IL_8RDV_003 | 1/D8/28:29, 1/D8/49:52 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_357 NA | |
| IL_8RDV_004 | 1/D8/32:36, 1/D8/42:46 | Symmetric double minor groove platform | geometric IL_7RQB_114 NA | |
| IL_8RDV_005 | 1/D8/69:77, 1/D8/94:102 | Bacterial 5S Loop E | homologous IL_7RQB_115 NA | |
| IL_8RDV_006 | 1/Z2/31:37, 1/Z2/493:499 | Triple sheared with non-canonical cWW | homologous IL_5J7L_245 NA | |
| IL_8RDV_007 | 1/Z2/43:44, 1/Z2/425:427 | Single bulged A | homologous IL_5J7L_246 NA | |
| IL_8RDV_008 | 1/Z2/50:51, 1/Z2/417:419 | Minor groove platform | homologous IL_5J7L_247 NA | |
| IL_8RDV_009 | 1/Z2/88:92, 1/Z2/104:111 | Kink-turn | homologous IL_7RQB_004 NA | |
| IL_8RDV_010 | 1/Z2/180:181, 1/Z2/209:211 | Single stack bend | homologous IL_5J7L_249 NA | |
| IL_8RDV_011 | 1/Z2/185:191, 1/Z2/198:205 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_4V9F_006 IL_62167.1 | |
| IL_8RDV_012 | 1/Z2/236:242, 1/Z2/250:255 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5J7L_251 NA | |
| IL_8RDV_015 | 1/Z2/280:282, 1/Z2/330:334 | No text annotation | homologous IL_5J7L_254 NA | |
| IL_8RDV_016 | 1/Z2/464:467, 1/Z2/479:492 | No text annotation | homologous IL_5J7L_255 NA | |
| IL_8RDV_017 | 1/Z2/519:522, 1/Z2/539:542 | Double sheared | homologous IL_5J7L_256 NA | |
| IL_8RDV_018 | 1/Z2/549:551, 1/Z2/560:562 | Isolated non-canonical cWW pair | geometric IL_5J7L_257 NA | |
| IL_8RDV_019 | 1/Z2/591:595, 1/Z2/603:607 | AAA cross-strand stack | homologous IL_7RQB_016 NA | |
| IL_8RDV_020 | 1/Z2/657:659, 1/Z2/791:793 | No text annotation | geometric IL_7RQB_017 NA | |
| IL_8RDV_021 | 1/Z2/659:663, 1/Z2/784:791 | tHW-tHW cross-strand stack | homologous IL_7RQB_018 NA | |
| IL_8RDV_022 | 1/Z2/682:683, 1/Z2/748:750 | Single bulged A | homologous IL_5J7L_261 NA | |
| IL_8RDV_023 | 1/Z2/687:688, 1/Z2/713:715 | Single bulged G | geometric IL_5J7L_262 NA | |
| IL_8RDV_024 | 1/Z2/688:693, 1/Z2/708:713 | Triple sheared with non-canonical cWW | homologous IL_7A0S_018 IL_57885.1 | |
| IL_8RDV_025 | 1/Z2/723:725, 1/Z2/742:743 | Major groove platform | homologous IL_4WF9_026 IL_48076.7 | |
| IL_8RDV_026 | 1/Z2/727:729, 1/Z2/738:740 | Isolated non-canonical cWW pair | homologous IL_7A0S_020 IL_01003.1 | |
| IL_8RDV_027 | 1/Z2/760:762, 1/Z2/772:776 | Multiple bulged bases | homologous IL_7A0S_021 IL_89509.1 | |
| IL_8RDV_028 | 1/Z2/822:823, 1/Z2/924:926 | Single stack bend | homologous IL_7A0S_022 IL_15011.1 | |
| IL_8RDV_029 | 1/Z2/828:832, 1/Z2/917:919 | No text annotation | ||
| IL_8RDV_173 | 1/Z2/828:833, 1/Z2/915:919 | No text annotation | ||
| IL_8RDV_030 | 1/Z2/832:833, 1/Z2/915:917 | No text annotation | ||
| IL_8RDV_031 | 1/Z2/835:836, 1/Z2/911:913 | Single stack bend | homologous IL_5J7L_269 NA | |
| IL_8RDV_032 | 1/Z2/841:847, 1/Z2/900:906 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_5J7L_270 NA | |
| IL_8RDV_033 | 1/Z2/847:848, 1/Z2/898:900 | Minor groove platform | geometric IL_7RQB_028 NA | |
| IL_8RDV_034 | 1/Z2/849:853, 1/Z2/894:897 | C-loop | homologous IL_7RQB_029 NA | |
| IL_8RDV_035 | 1/Z2/855:857, 1/Z2/890:892 | Isolated non-canonical cWW pair | homologous IL_5J7L_273 NA | |
| IL_8RDV_036 | 1/Z2/978:980, 1/Z2/1144:1145 | Single bulged C | homologous IL_7RQB_035 NA | |
| IL_8RDV_037 | 1/Z2/982:986, 1/Z2/1138:1142 | UAA/GAN | homologous IL_5J7L_277 NA | |
| IL_8RDV_038 | 1/Z2/988:995, 1/Z2/1135:1136 | SSU/LSU pseudoknot | geometric IL_5J7L_278 NA | |
| IL_8RDV_039 | 1/Z2/995:997, 1/Z2/1134:1135 | Single bulged U | homologous IL_7RQB_038 NA | |
| IL_8RDV_040 | 1/Z2/1002:1008, 1/Z2/1124:1129 | Kink-turn related | geometric IL_5J7L_280 NA | |
| IL_8RDV_041 | 1/Z2/1008:1014, 1/Z2/1108:1124 | No text annotation | geometric IL_5J7L_281 NA | |
| IL_8RDV_042 | 1/Z2/1015:1018, 1/Z2/1105:1107 | Isolated non-canonical cWW pair | homologous IL_5J7L_282 NA | |
| IL_8RDV_043 | 1/Z2/1022:1025, 1/Z2/1098:1101 | Tandem non-canonical cWW pairs | homologous IL_5J7L_283 NA | |
| IL_8RDV_044 | 1/Z2/1027:1035, 1/Z2/1092:1096 | Kink-turn | homologous IL_5J7L_284 NA | |
| IL_8RDV_045 | 1/Z2/1043:1046, 1/Z2/1060:1063 | No text annotation | homologous IL_5J7L_285 NA | |
| IL_8RDV_046 | 1/Z2/1071:1074, 1/Z2/1085:1086 | No text annotation | homologous IL_6PRV_002 NA | |
| IL_8RDV_048 | 1/Z2/1180:1182, 1/Z2/1231:1234 | Isolated cWS basepair | homologous IL_5J7L_286 NA | |
| IL_8RDV_049 | 1/Z2/1186:1190, 1/Z2/1224:1227 | No text annotation | homologous IL_5J7L_287 NA | |
| IL_8RDV_050 | 1/Z2/1192:1199, 1/Z2/1218:1222 | Kink-turn | homologous IL_5J7L_288 NA | |
| IL_8RDV_051 | 1/Z2/1246:1253, 1/Z2/1997:2003 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_289 NA | |
| IL_8RDV_052 | 1/Z2/1294:1297, 1/Z2/1591:1592 | Major groove platform; stack outside cWW | homologous IL_5J7L_290 NA | |
| IL_8RDV_053 | 1/Z2/1303:1307, 1/Z2/1315:1317 | C-loop | homologous IL_5J7L_291 NA | |
| IL_8RDV_054 | 1/Z2/1335:1339, 1/Z2/1360:1364 | UAA/GAN | homologous IL_5J7L_292 NA | |
| IL_8RDV_055 | 1/Z2/1341:1345, 1/Z2/1354:1358 | tSH-tHW-tHS | homologous IL_5J7L_293 NA | |
| IL_8RDV_057 | 1/Z2/1401:1405, 1/Z2/1565:1569 | UAA/GAN | geometric IL_5J7L_295 NA | |
| IL_8RDV_058 | 1/Z2/1416:1419, 1/Z2/1545:1549 | Tandem non-canonical cWW pairs | homologous IL_5J7L_296 NA | |
| IL_8RDV_059 | 1/Z2/1421:1424, 1/Z2/1539:1543 | tSH-tHW | homologous IL_5J7L_297 NA | |
| IL_8RDV_060 | 1/Z2/1434:1435, 1/Z2/1443:1445 | Single bulged U | geometric IL_5J7L_298 NA | |
| IL_8RDV_061 | 1/Z2/1457:1462, 1/Z2/1499:1504 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_7A0S_027 NA | |
| IL_8RDV_063 | 1/Z2/1473:1475, 1/Z2/1483:1484 | Single bulged A | homologous IL_5J7L_302 NA | |
| IL_8RDV_064 | 1/Z2/1639:1644, 1/Z2/1990:1992 | No text annotation | homologous IL_5J7L_304 NA | |
| IL_8RDV_065 | 1/Z2/1651:1653, 1/Z2/1981:1983 | Isolated tWW turn | homologous IL_4WF9_063 IL_10432.1 | |
| IL_8RDV_066 | 1/Z2/1654:1657, 1/Z2/1979:1980 | Major groove platform; stack outside cWW | geometric IL_5J7L_306 NA | |
| IL_8RDV_174 | 1/Z2/1654:1662, 1/Z2/1976:1980 | No text annotation | homologous IL_5J7L_386 NA | |
| IL_8RDV_067 | 1/Z2/1657:1662, 1/Z2/1976:1979 | Intercalated tWH | homologous IL_5J7L_307 NA | |
| IL_8RDV_068 | 1/Z2/1674:1679, 1/Z2/1684:1690 | tSH-tSH-tHH-tHS | geometric IL_5J7L_308 NA | |
| IL_8RDV_069 | 1/Z2/1702:1704, 1/Z2/1728:1730 | Self complementary | geometric IL_364D_004 NA | |
| IL_8RDV_070 | 1/Z2/1706:1710, 1/Z2/1722:1726 | Triple sheared | homologous IL_5J7L_310 NA | |
| IL_8RDV_071 | 1/Z2/1756:1757, 1/Z2/1966:1968 | Single bulged A | homologous IL_5J7L_312 NA | |
| IL_8RDV_072 | 1/Z2/1784:1790, 1/Z2/1799:1807 | Kink-turn related | homologous IL_7RQB_070 NA | |
| IL_8RDV_073 | 1/Z2/1823:1826, 1/Z2/1888:1889 | Minor groove platform, major groove intercalation | homologous IL_5J7L_314 NA | |
| IL_8RDV_074 | 1/Z2/1827:1828, 1/Z2/1884:1887 | Major groove intercalation | homologous IL_5J7L_315 NA | |
| IL_8RDV_075 | 1/Z2/1832:1835, 1/Z2/1879:1880 | Minor groove platform | homologous IL_7RQB_073 NA | |
| IL_8RDV_175 | 1/Z2/1837:1846, 1/Z2/1868:1877 | No text annotation | homologous IL_5J7L_387 NA | |
| IL_8RDV_076 | 1/Z2/1850:1853, 1/Z2/1860:1864 | UAA/GAN related | homologous IL_5J7L_317 NA | |
| IL_8RDV_077 | 1/Z2/1919:1920, 1/Z2/1950:1953 | Bulged stacked bases | geometric IL_5J7L_318 NA | |
| IL_8RDV_078 | 1/Z2/1920:1931, 1/Z2/1947:1950 | No text annotation | homologous IL_7A0S_072 IL_04332.3 | |
| IL_8RDV_079 | 1/Z2/2035:2038, 1/Z2/2600:2602 | Major groove platform with extra pair | geometric IL_7RQB_093 NA | |
| IL_8RDV_080 | 1/Z2/2040:2042, 1/Z2/2595:2598 | No text annotation | homologous IL_5J7L_321 NA | |
| IL_8RDV_081 | 1/Z2/2053:2055, 1/Z2/2425:2426 | Single bulged U | homologous IL_7A0S_075 IL_97561.1 | |
| IL_8RDV_082 | 1/Z2/2056:2057, 1/Z2/2421:2424 | Minor groove platform | homologous IL_5J7L_324 NA | |
| IL_8RDV_083 | 1/Z2/2067:2069, 1/Z2/2219:2222 | Isolated tHS basepair with bulges | homologous IL_7RQB_082 NA | |
| IL_8RDV_084 | 1/Z2/2071:2073, 1/Z2/2215:2217 | Isolated non-canonical cWW pair | homologous IL_5J7L_326 NA | |
| IL_8RDV_085 | 1/Z2/2188:2190, 1/Z2/2203:2204 | Single bulged U | homologous IL_5J7L_331 NA | |
| IL_8RDV_086 | 1/Z2/2280:2282, 1/Z2/2300:2304 | Isolated tHS basepair with bulges | homologous IL_4WF9_086 IL_14250.1 | |
| IL_8RDV_087 | 1/Z2/2333:2336, 1/Z2/2347:2350 | Double sheared | homologous IL_5J7L_333 NA | |
| IL_8RDV_088 | 1/Z2/2384:2386, 1/Z2/2397:2398 | Multiple bulged bases | geometric IL_3MXH_004 IL_71421.1 | |
| IL_8RDV_089 | 1/Z2/2436:2437, 1/Z2/2481:2483 | Single stack bend | homologous IL_4WF9_089 IL_15011.1 | |
| IL_8RDV_090 | 1/Z2/2437:2438, 1/Z2/2479:2481 | Major groove platform | geometric IL_7RQB_092 NA | |
| IL_8RDV_091 | 1/Z2/2440:2442, 1/Z2/2476:2477 | Major groove platform | homologous IL_7A0S_085 IL_48076.7 | |
| IL_8RDV_092 | 1/Z2/2442:2444, 1/Z2/2472:2476 | Major groove minor groove platform with extra cWW | geometric IL_7A0S_086 IL_36931.1 | |
| IL_8RDV_093 | 1/Z2/2449:2453, 1/Z2/2463:2467 | Double sheared with non-canonical cWW | homologous IL_5J7L_338 NA | |
| IL_8RDV_094 | 1/Z2/2490:2491, 1/Z2/2563:2565 | Major groove platform | homologous IL_7RQB_096 NA | |
| IL_8RDV_095 | 1/Z2/2493:2495, 1/Z2/2557:2561 | Isolated non-canonical cWW with bulges | geometric IL_5J7L_340 NA | |
| IL_8RDV_096 | 1/Z2/2495:2496, 1/Z2/2554:2557 | No text annotation | homologous IL_5J7L_341 NA | |
| IL_8RDV_097 | 1/Z2/2505:2506, 1/Z2/2523:2526 | Major groove platform with intercalation | homologous IL_5J7L_342 NA | |
| IL_8RDV_098 | 1/Z2/2574:2575, 1/Z2/2584:2586 | Single bulged A | homologous IL_7RQB_101 NA | |
| IL_8RDV_099 | 1/Z2/2616:2618, 1/Z2/2766:2768 | Isolated non-canonical cWW pair | geometric IL_3SZX_003 IL_01003.1 | |
| IL_8RDV_100 | 1/Z2/2619:2623, 1/Z2/2757:2765 | tSH-tHS-tHW | homologous IL_7RQB_102 NA | |
| IL_8RDV_101 | 1/Z2/2634:2641, 1/Z2/2646:2652 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5TBW_377 NA | |
| IL_8RDV_102 | 1/Z2/2663:2667, 1/Z2/2708:2710 | C-loop | homologous IL_7RQB_104 NA | |
| IL_8RDV_103 | 1/Z2/2670:2674, 1/Z2/2701:2705 | UAA/GAN related, with intercalation | homologous IL_5J7L_348 NA | |
| IL_8RDV_104 | 1/Z2/2678:2679, 1/Z2/2694:2697 | Multiple bulged bases | homologous IL_5J7L_349 NA | |
| IL_8RDV_105 | 1/Z2/2720:2725, 1/Z2/2745:2750 | UAA/GAN with extra cWW | homologous IL_7RQB_107 NA | |
| IL_8RDV_106 | 1/Z2/2772:2777, 1/Z2/2855:2860 | No text annotation | ||
| IL_8RDV_107 | 1/Z2/2804:2805, 1/Z2/2844:2846 | Major groove intercalation | homologous IL_5J7L_352 NA | |
| IL_8RDV_108 | 1/Z2/2809:2812, 1/Z2/2836:2840 | Multiple bulged bases with non-canonical cWW | homologous IL_5J7L_353 NA | |
| IL_8RDV_109 | 1/Z2/2813:2818, 1/Z2/2831:2835 | tHS double platform | homologous IL_4WF9_108 IL_48489.1 | |
| IL_8RDV_110 | 1/iN/77:79, 1/iN/595:596 | Single bulged G | homologous IL_5J7L_001 NA | |
| IL_8RDV_111 | 1/iN/91:92, 1/iN/439:441 | Single bulged A | homologous IL_5J7L_002 NA | |
| IL_8RDV_112 | 1/iN/94:99, 1/iN/402:404 | No text annotation | homologous IL_5J7L_003 NA | |
| IL_8RDV_113 | 1/iN/101:103, 1/iN/399:400 | Minor groove platform | homologous IL_4LFB_004 IL_34520.1 | |
| IL_8RDV_114 | 1/iN/110:113, 1/iN/148:149 | Multiple bulged bases | homologous IL_5J7L_005 NA | |
| IL_8RDV_115 | 1/iN/114:116, 1/iN/144:147 | Minor groove platform with extra cWW | homologous IL_5J7L_006 NA | |
| IL_8RDV_116 | 1/iN/117:120, 1/iN/142:143 | Minor groove platform | homologous IL_5J7L_007 NA | |
| IL_8RDV_117 | 1/iN/122:123, 1/iN/138:140 | Single bulged G | geometric IL_5DEA_002 NA | |
| IL_8RDV_118 | 1/iN/173:176, 1/iN/274:276 | Isolated non-canonical cWW pair | homologous IL_5J7L_009 NA | |
| IL_8RDV_119 | 1/iN/177:181, 1/iN/270:273 | Minor groove platform related | homologous IL_5J7L_010 NA | |
| IL_8RDV_120 | 1/iN/189:191, 1/iN/221:223 | Isolated cWH basepair | homologous IL_5J7L_011 NA | |
| IL_8RDV_121 | 1/iN/192:199, 1/iN/212:220 | No text annotation | ||
| IL_8RDV_122 | 1/iN/285:290, 1/iN/320:327 | Kink-turn with non-sequential stacking | homologous IL_4LFB_011 IL_46174.4 | |
| IL_8RDV_123 | 1/iN/292:295, 1/iN/317:318 | No text annotation | homologous IL_4LFB_012 IL_22002.1 | |
| IL_8RDV_124 | 1/iN/335:336, 1/iN/347:351 | C-loop | homologous IL_5J7L_016 NA | |
| IL_8RDV_125 | 1/iN/410:412, 1/iN/435:436 | Single bulged U | homologous IL_5J7L_017 NA | |
| IL_8RDV_126 | 1/iN/414:418, 1/iN/432:433 | C-loop | homologous IL_5J7L_018 NA | |
| IL_8RDV_127 | 1/iN/418:419, 1/iN/430:432 | Single bulged G | geometric IL_5J7L_019 NA | |
| IL_8RDV_128 | 1/iN/452:459, 1/iN/470:476 | No text annotation | homologous IL_4LFB_017 IL_62329.1 | |
| IL_8RDV_129 | 1/iN/483:485, 1/iN/535:540 | No text annotation | homologous IL_5J7L_021 NA | |
| IL_8RDV_130 | 1/iN/489:493, 1/iN/526:531 | tSH-tHW-tWW | geometric IL_5J7L_022 NA | |
| IL_8RDV_131 | 1/iN/493:499, 1/iN/519:526 | No text annotation | ||
| IL_8RDV_132 | 1/iN/547:554, 1/iN/583:584 | SSU/LSU pseudoknot | homologous IL_5J7L_024 NA | |
| IL_8RDV_133 | 1/iN/558:564, 1/iN/571:579 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_8RDV_134 | 1/iN/612:618, 1/iN/924:925 | No text annotation | homologous IL_4LFB_022 IL_20847.1 | |
| IL_8RDV_135 | 1/iN/623:627, 1/iN/801:805 | tSH-tHW-tHS | homologous IL_4LFB_023 IL_05821.1 | |
| IL_8RDV_136 | 1/iN/637:639, 1/iN/688:689 | Major groove platform | homologous IL_5J7L_028 NA | |
| IL_8RDV_137 | 1/iN/640:641, 1/iN/684:687 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_029 NA | |
| IL_8RDV_139 | 1/iN/698:699, 1/iN/795:798 | Major groove platform; stack outside cWW | homologous IL_4LFB_027 IL_74641.1 | |
| IL_8RDV_140 | 1/iN/703:704, 1/iN/789:791 | Single stack bend | homologous IL_5J7L_032 NA | |
| IL_8RDV_141 | 1/iN/706:710, 1/iN/784:787 | Tandem non-canonical cWW pairs | homologous IL_5J7L_033 NA | |
| IL_8RDV_176 | 1/iN/717:721, 1/iN/757:761 | Triple non-canonical cWW pairs | homologous IL_4LFB_065 IL_71154.1 | |
| IL_8RDV_143 | 1/iN/728:732, 1/iN/743:750 | Kink-turn | homologous IL_5J7L_035 NA | |
| IL_8RDV_144 | 1/iN/818:822, 1/iN/848:849 | Left turn | homologous IL_4LFB_032 IL_29346.3 | |
| IL_8RDV_145 | 1/iN/823:827, 1/iN/843:847 | tSH-tHW-tHS | homologous IL_4LFB_033 IL_05821.1 | |
| IL_8RDV_146 | 1/iN/931:938, 1/iN/949:954 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_5J7L_038 NA | |
| IL_8RDV_147 | 1/iN/966:967, 1/iN/1438:1440 | Single bulged A | homologous IL_5J7L_039 NA | |
| IL_8RDV_148 | 1/iN/969:971, 1/iN/1435:1436 | Single bulged G | homologous IL_4LFB_036 IL_28408.1 | |
| IL_8RDV_149 | 1/iN/977:979, 1/iN/1425:1429 | Minor groove platform | homologous IL_5J7L_041 NA | |
| IL_8RDV_150 | 1/iN/996:998, 1/iN/1271:1274 | Minor groove platform with extra cWW | geometric IL_3MXH_001 IL_82096.1 | |
| IL_8RDV_151 | 1/iN/1037:1041, 1/iN/1088:1089 | Minor groove platform | homologous IL_6CZR_151 NA | |
| IL_8RDV_152 | 1/iN/1043:1046, 1/iN/1082:1086 | No text annotation | ||
| IL_8RDV_153 | 1/iN/1092:1094, 1/iN/1253:1254 | Single bulged U | homologous IL_4LFB_042 IL_97561.1 | |
| IL_8RDV_154 | 1/iN/1096:1100, 1/iN/1249:1251 | Isolated cWS basepair | homologous IL_4LFB_044 IL_82453.1 | |
| IL_8RDV_155 | 1/iN/1101:1102, 1/iN/1244:1248 | Minor groove platform | homologous IL_5J7L_048 NA | |
| IL_8RDV_156 | 1/iN/1104:1105, 1/iN/1240:1242 | Single bulged A | geometric IL_5J7L_049 NA | |
| IL_8RDV_157 | 1/iN/1105:1107, 1/iN/1238:1240 | Isolated non-canonical cWW pair | homologous IL_5J7L_050 NA | |
| IL_8RDV_158 | 1/iN/1168:1172, 1/iN/1189:1194 | No text annotation | homologous IL_5J7L_051 NA | |
| IL_8RDV_159 | 1/iN/1203:1206, 1/iN/1220:1226 | No text annotation | homologous IL_5J7L_053 NA | |
| IL_8RDV_160 | 1/iN/1292:1298, 1/iN/1329:1335 | No text annotation | homologous IL_4LFB_051 IL_12056.1 | |
| IL_8RDV_161 | 1/iN/1300:1303, 1/iN/1322:1327 | 180 degree turn | homologous IL_4LFB_052 IL_08849.1 | |
| IL_8RDV_162 | 1/iN/1304:1307, 1/iN/1318:1321 | Tandem non-canonical cWW pairs | geometric IL_4V88_461 NA | |
| IL_8RDV_163 | 1/iN/1348:1353, 1/iN/1374:1379 | No text annotation | homologous IL_4LFB_055 IL_57885.1 | |
| IL_8RDV_164 | 1/iN/1444:1446, 1/iN/1546:1549 | No text annotation | homologous IL_5J7L_058 NA | |
| IL_8RDV_165 | 1/iN/1446:1449, 1/iN/1542:1546 | No text annotation | geometric IL_4V88_464 NA | |
| IL_8RDV_166 | 1/iN/1450:1452, 1/iN/1539:1541 | Isolated non-canonical cWW pair | geometric IL_5MWI_007 NA | |
| IL_8RDV_167 | 1/iN/1452:1454, 1/iN/1536:1539 | Decoding loop related | geometric IL_3C3Z_002 IL_29925.1 | |
| IL_8RDV_168 | 1/iN/1457:1459, 1/iN/1531:1533 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 NA | |
| IL_8RDV_169 | 1/iN/1461:1464, 1/iN/1526:1529 | Double sheared | homologous IL_5J7L_062 NA | |
| IL_8RDV_170 | 1/iN/1475:1480, 1/iN/1511:1515 | Triple sheared related | homologous IL_5J7L_063 NA | |
| IL_8RDV_171 | 1/iN/1485:1487, 1/iN/1505:1506 | Single bulged A | homologous IL_5J7L_064 NA | |
| IL_8RDV_178 | 1/iN/1490:1493, 1/iN/1500:1502 | No text annotation | homologous IL_5J7L_065 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8RDV_013 | Isolated non-canonical cWW pair | ||
| IL_8RDV_014 | Isolated non-canonical cWW pair | ||
| IL_8RDV_047 | No text annotation | ||
| IL_8RDV_056 | No text annotation | ||
| IL_8RDV_062 | No text annotation | ||
| IL_8RDV_138 | No text annotation | ||
| IL_8RDV_142 | No text annotation | ||
| IL_8RDV_172 | No text annotation | ||
| IL_8RDV_177 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_8RDV_019 | 1/D8/8:14, 1/D8/66:67, 1/D8/104:107 | No text annotation | homologous J3_7A0S_021 J3_47324.1 | |
| J3_8RDV_020 | 1/Z2/37:38, 1/Z2/457:464, 1/Z2/492:493 | No text annotation | geometric J3_5J7L_036 NA | |
| J3_8RDV_021 | 1/Z2/37:38, 1/Z2/457:467, 1/Z2/479:493 | No text annotation | homologous J3_9DFE_002 J3_17917.1 | |
| J3_8RDV_022 | 1/Z2/39:42, 1/Z2/428:444, 1/Z2/451:456 | No text annotation | homologous J3_9DFE_003 J3_07616.1 | |
| J3_8RDV_023 | 1/Z2/63:64, 1/Z2/77:83, 1/Z2/116:120 | No text annotation | homologous J3_5J7L_037 NA | |
| J3_8RDV_024 | 1/Z2/284:288, 1/Z2/303:312, 1/Z2/324:328 | No text annotation | homologous J3_4WF9_015 J3_77124.1 | |
| J3_8RDV_001 | 1/Z2/668:674, 1/Z2/758:760, 1/Z2/776:779 | No text annotation | homologous J3_5J7L_038 NA | |
| J3_8RDV_002 | 1/Z2/683:685, 1/Z2/717:721, 1/Z2/745:748 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_8RDV_003 | 1/Z2/1039:1041, 1/Z2/1065:1071, 1/Z2/1086:1088 | No text annotation | homologous J3_5J7L_040 NA | |
| J3_8RDV_004 | 1/Z2/1282:1287, 1/Z2/1613:1615, 1/Z2/1627:1630 | No text annotation | homologous J3_5J7L_041 NA | |
| J3_8RDV_005 | 1/Z2/1290:1293, 1/Z2/1593:1599, 1/Z2/1608:1610 | No text annotation | homologous J3_7A0S_007 J3_47341.1 | |
| J3_8RDV_006 | 1/Z2/1328:1333, 1/Z2/1366:1370, 1/Z2/1385:1387 | No text annotation | ||
| J3_8RDV_025 | 1/Z2/1408:1413, 1/Z2/1552:1553, 1/Z2/1556:1562 | No text annotation | homologous J3_5J7L_069 NA | |
| J3_8RDV_007 | 1/Z2/2077:2079, 1/Z2/2182:2186, 1/Z2/2206:2211 | Kink-turn 3-way junction | homologous J3_5J7L_044 NA | |
| J3_8RDV_026 | 1/Z2/2265:2267, 1/Z2/2367:2378, 1/Z2/2404:2410 | No text annotation | homologous J3_5J7L_070 NA | |
| J3_8RDV_008 | 1/Z2/2278:2280, 1/Z2/2304:2306, 1/Z2/2315:2320 | No text annotation | homologous J3_5J7L_045 NA | |
| J3_8RDV_009 | 1/Z2/2500:2503, 1/Z2/2528:2530, 1/Z2/2544:2550 | No text annotation | homologous J3_5J7L_046 NA | |
| J3_8RDV_027 | 1/Z2/2780:2781, 1/Z2/2797:2802, 1/Z2/2848:2852 | No text annotation | ||
| J3_8RDV_028 | 1/iN/93:94, 1/iN/404:410, 1/iN/436:438 | No text annotation | geometric J3_5J7L_001 NA | |
| J3_8RDV_029 | 1/iN/93:99, 1/iN/402:410, 1/iN/436:438 | No text annotation | homologous J3_5J7L_050 NA | |
| J3_8RDV_030 | 1/iN/629:631, 1/iN/695:698, 1/iN/798:799 | No text annotation | geometric J3_1KUQ_001 J3_01633.1 | |
| J3_8RDV_031 | 1/iN/629:631, 1/iN/695:699, 1/iN/795:799 | No text annotation | homologous J3_5J7L_051 NA | |
| J3_8RDV_032 | 1/iN/716:717, 1/iN/761:769, 1/iN/776:778 | No text annotation | homologous J3_5J7L_003 NA | |
| J3_8RDV_010 | 1/iN/870:873, 1/iN/901:905, 1/iN/912:918 | No text annotation | homologous J3_5J7L_004 NA | |
| J3_8RDV_011 | 1/iN/980:983, 1/iN/1389:1395, 1/iN/1417:1424 | No text annotation | homologous J3_4LFB_002 J3_85722.1 | |
| J3_8RDV_012 | 1/iN/987:990, 1/iN/1280:1282, 1/iN/1382:1385 | No text annotation | homologous J3_4LFB_003 J3_44359.1 | |
| J3_8RDV_013 | 1/iN/999:1006, 1/iN/1017:1028, 1/iN/1266:1270 | No text annotation | homologous J3_5J7L_006 NA | |
| J3_8RDV_014 | 1/iN/1034:1037, 1/iN/1089:1091, 1/iN/1255:1260 | No text annotation | homologous J3_5J7L_007 NA | |
| J3_8RDV_033 | 1/iN/1034:1041, 1/iN/1088:1091, 1/iN/1255:1260 | No text annotation | homologous J3_4LFB_016 J3_28881.1 | |
| J3_8RDV_016 | 1/iN/1107:1112, 1/iN/1151:1157, 1/iN/1232:1238 | No text annotation | homologous J3_5J7L_008 NA | |
| J3_8RDV_034 | 1/iN/1117:1118, 1/iN/1127:1130, 1/iN/1143:1146 | No text annotation | homologous J3_4LFB_017 J3_11018.1 | |
| J3_8RDV_017 | 1/iN/1160:1162, 1/iN/1200:1203, 1/iN/1226:1229 | No text annotation | homologous J3_5J7L_010 NA | |
| J3_8RDV_035 | 1/iN/1160:1162, 1/iN/1200:1206, 1/iN/1220:1229 | No text annotation | homologous J3_4LFB_018 J3_40706.1 | |
| J4_8RDV_001 | 1/Z2/265:268, 1/Z2/346:358, 1/Z2/382:389, 1/Z2/404:407 | No text annotation | ||
| J4_8RDV_002 | 1/Z2/284:288, 1/Z2/303:306, 1/Z2/310:312, 1/Z2/324:328 | No text annotation | homologous J4_7A0S_002 J4_16174.1 | |
| J4_8RDV_003 | 1/Z2/586:589, 1/Z2/609:613, 1/Z2/620:623, 1/Z2/635:641 | No text annotation | homologous J4_5J7L_020 NA | |
| J4_8RDV_004 | 1/Z2/1254:1260, 1/Z2/1278:1279, 1/Z2/1633:1636, 1/Z2/1995:1996 | No text annotation | homologous J4_5J7L_021 NA | |
| J4_8RDV_005 | 1/Z2/1294:1298, 1/Z2/1322:1327, 1/Z2/1388:1389, 1/Z2/1585:1592 | No text annotation | homologous J4_5J7L_022 NA | |
| J4_8RDV_006 | 1/Z2/1297:1298, 1/Z2/1322:1327, 1/Z2/1388:1389, 1/Z2/1585:1591 | No text annotation | homologous J4_5J7L_023 NA | |
| J4_8RDV_007 | 1/Z2/1428:1429, 1/Z2/1450:1455, 1/Z2/1506:1512, 1/Z2/1534:1535 | No text annotation | ||
| J4_8RDV_008 | 1/Z2/1758:1762, 1/Z2/1774:1778, 1/Z2/1813:1816, 1/Z2/1961:1965 | No text annotation | homologous J4_5J7L_025 NA | |
| J4_8RDV_009 | 1/Z2/1819:1821, 1/Z2/1891:1892, 1/Z2/1910:1919, 1/Z2/1953:1958 | No text annotation | homologous J4_5J7L_026 NA | |
| J4_8RDV_010 | 1/Z2/2268:2272, 1/Z2/2326:2330, 1/Z2/2353:2355, 1/Z2/2364:2366 | No text annotation | homologous J4_5J7L_027 NA | |
| J4_8RDV_011 | 1/Z2/2626:2629, 1/Z2/2657:2659, 1/Z2/2714:2718, 1/Z2/2752:2754 | No text annotation | homologous J4_5J7L_028 NA | |
| J4_8RDV_012 | 1/iN/160:168, 1/iN/281:283, 1/iN/329:332, 1/iN/354:355 | No text annotation | ||
| J4_8RDV_013 | 1/iN/188:189, 1/iN/223:230, 1/iN/237:243, 1/iN/262:263 | No text annotation | ||
| J4_8RDV_014 | 1/iN/618:620, 1/iN/808:813, 1/iN/854:865, 1/iN/923:924 | No text annotation | homologous J4_5J7L_003 NA | |
| J5_8RDV_001 | 1/Z2/54:61, 1/Z2/122:127, 1/Z2/136:137, 1/Z2/154:156, 1/Z2/173:175 | No text annotation | homologous J5_5J7L_013 NA | |
| J5_8RDV_002 | 1/Z2/514:516, 1/Z2/545:549, 1/Z2/562:564, 1/Z2/1245:1246, 1/Z2/2003:2004 | No text annotation | homologous J5_5J7L_014 NA | |
| J5_8RDV_003 | 1/Z2/569:574, 1/Z2/653:656, 1/Z2/794:797, 1/Z2/1179:1180, 1/Z2/1234:1240 | No text annotation | homologous J5_5J7L_015 NA | |
| J5_8RDV_004 | 1/Z2/1662:1670, 1/Z2/1694:1695, 1/Z2/1737:1738, 1/Z2/1742:1750, 1/Z2/1974:1976 | No text annotation | homologous J5_5J7L_016 NA | |
| J5_8RDV_005 | 1/Z2/2043:2050, 1/Z2/2429:2436, 1/Z2/2483:2489, 1/Z2/2566:2571, 1/Z2/2589:2594 | No text annotation | ||
| J5_8RDV_006 | 1/Z2/2060:2063, 1/Z2/2226:2229, 1/Z2/2241:2242, 1/Z2/2264:2265, 1/Z2/2410:2418 | No text annotation | homologous J5_9DFE_007 J5_39529.2 | |
| J5_8RDV_007 | 1/iN/83:86, 1/iN/446:449, 1/iN/479:483, 1/iN/540:543, 1/iN/588:591 | No text annotation | homologous J5_5J7L_001 NA | |
| J5_8RDV_008 | 1/iN/83:86, 1/iN/446:449, 1/iN/479:485, 1/iN/535:543, 1/iN/588:591 | No text annotation | homologous J5_5J7L_002 NA | |
| J5_8RDV_009 | 1/iN/105:108, 1/iN/151:158, 1/iN/357:359, 1/iN/380:382, 1/iN/393:397 | No text annotation | homologous J5_5J7L_003 NA | |
| J6_8RDV_001 | 1/Z2/52:53, 1/Z2/176:180, 1/Z2/211:221, 1/Z2/228:232, 1/Z2/259:263, 1/Z2/409:416 | No text annotation | ||
| J6_8RDV_002 | 1/Z2/2060:2063, 1/Z2/2226:2229, 1/Z2/2241:2242, 1/Z2/2264:2267, 1/Z2/2367:2378, 1/Z2/2404:2418 | No text annotation | ||
| J7_8RDV_001 | 1/Z2/15:22, 1/Z2/508:514, 1/Z2/2004:2009, 1/Z2/2026:2029, 1/Z2/2608:2613, 1/Z2/2771:2772, 1/Z2/2860:2861 | No text annotation | ||
| J7_8RDV_002 | 1/Z2/802:807, 1/Z2/820:823, 1/Z2/924:930, 1/Z2/955:960, 1/Z2/971:975, 1/Z2/1148:1149, 1/Z2/1169:1174 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_8RDV_015 | No text annotation | ||
| J3_8RDV_018 | No text annotation |
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