HL_8RDV_004

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GCGGCAAUAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RDV_004 not in the Motif Atlas

Geometric match to HL_8H1B_001

Geometric discrepancy: 0.3679

The information below is about HL_8H1B_001

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_46665.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8RDV|1|Z2|G|93
8RDV|1|Z2|C|94
8RDV|1|Z2|G|95
8RDV|1|Z2|G|96
8RDV|1|Z2|C|97
8RDV|1|Z2|A|98
8RDV|1|Z2|A|99
8RDV|1|Z2|U|100
8RDV|1|Z2|A|101
8RDV|1|Z2|U|102
8RDV|1|Z2|C|103

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain Sn

Large ribosomal subunit protein uL23

Chain TI

Large ribosomal subunit protein uL24

Chain XE

Large ribosomal subunit protein uL29