HL_8RDV_010

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RDV_010 not in the Motif Atlas

Homologous match to HL_5J7L_141

Geometric discrepancy: 0.0697

The information below is about HL_5J7L_141

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37369.2

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

9

Unit IDs

8RDV|1|Z2|C|243
8RDV|1|Z2|G|244
8RDV|1|Z2|G|245
8RDV|1|Z2|C|246
8RDV|1|Z2|G|247
8RDV|1|Z2|A|248
8RDV|1|Z2|G|249

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain Kd

Large ribosomal subunit protein uL15

Chain WD

Large ribosomal subunit protein bL28

Chain dh

Large ribosomal subunit protein bL35