HL_8RDV_013
3D structure
- PDB id
- 8RDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GUGAUAGUC
- Length
- 9 nucleotides
- Bulged bases
- 8RDV|1|Z2|G|316, 8RDV|1|Z2|A|317, 8RDV|1|Z2|U|318
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8RDV_013 not in the Motif Atlas
- Homologous match to HL_7RQB_012
- Geometric discrepancy: 0.0904
- The information below is about HL_7RQB_012
- Detailed Annotation
- T-loop with unstacked turn
- Broad Annotation
- T-loop
- Motif group
- HL_08002.9
- Basepair signature
- cWW-tWH-F-F
- Number of instances in this motif group
- 19
Unit IDs
8RDV|1|Z2|G|314
8RDV|1|Z2|U|315
8RDV|1|Z2|G|316
8RDV|1|Z2|A|317
8RDV|1|Z2|U|318
8RDV|1|Z2|A|319
8RDV|1|Z2|G|320
8RDV|1|Z2|U|321
8RDV|1|Z2|C|322
Current chains
- Chain Z2
- 23S rRNA
Nearby chains
- Chain E9
- Large ribosomal subunit protein uL4
- Chain TI
- Large ribosomal subunit protein uL24
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