HL_8RDV_015

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

8RDV|1|Z2|G|394

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RDV_015 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.0819

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8RDV|1|Z2|G|393
8RDV|1|Z2|G|394
8RDV|1|Z2|A|395
8RDV|1|Z2|C|396
8RDV|1|Z2|C|397
8RDV|1|Z2|A|398
8RDV|1|Z2|U|399
8RDV|1|Z2|C|400

Current chains

Chain Z2

23S rRNA

Nearby chains