HL_8RDV_022

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UUAAUAG

Length

7 nucleotides

Bulged bases

8RDV|1|Z2|U|630

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RDV_022 not in the Motif Atlas

Homologous match to HL_7RQB_021

Geometric discrepancy: 0.171

The information below is about HL_7RQB_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

8RDV|1|Z2|U|626
8RDV|1|Z2|U|627
8RDV|1|Z2|A|628
8RDV|1|Z2|A|629
8RDV|1|Z2|U|630
8RDV|1|Z2|A|631
8RDV|1|Z2|G|632

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain bk

Large ribosomal subunit protein bL33

Chain dh

Large ribosomal subunit protein bL35