HL_8RDV_023

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGUAACAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RDV_023 not in the Motif Atlas

Homologous match to HL_5J7L_154

Geometric discrepancy: 0.1445

The information below is about HL_5J7L_154

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8RDV|1|Z2|C|697
8RDV|1|Z2|G|698
8RDV|1|Z2|U|699
8RDV|1|Z2|A|700
8RDV|1|Z2|A|701
8RDV|1|Z2|C|702
8RDV|1|Z2|A|703
8RDV|1|Z2|G|704

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain OL

Small ribosomal subunit protein uS15

Chain iN

Small subunit ribosomal RNA; SSU rRNA