HL_8RDV_037

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

8RDV|1|Z2|U|1380, 8RDV|1|Z2|U|1381

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RDV_037 not in the Motif Atlas

Homologous match to HL_7RQB_036

Geometric discrepancy: 0.0725

The information below is about HL_7RQB_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69023.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8RDV|1|Z2|G|1373
8RDV|1|Z2|U|1374
8RDV|1|Z2|U|1375
8RDV|1|Z2|A|1376
8RDV|1|Z2|A|1377
8RDV|1|Z2|U|1378
8RDV|1|Z2|A|1379
8RDV|1|Z2|U|1380
8RDV|1|Z2|U|1381
8RDV|1|Z2|C|1382

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain Sn

Large ribosomal subunit protein uL23