HL_8RDV_042

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

8RDV|1|Z2|A|1602, 8RDV|1|Z2|A|1604, 8RDV|1|Z2|A|1606

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RDV_042 not in the Motif Atlas

Homologous match to HL_7RQB_040

Geometric discrepancy: 0.057

The information below is about HL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

8RDV|1|Z2|C|1600
8RDV|1|Z2|G|1601
8RDV|1|Z2|A|1602
8RDV|1|Z2|C|1603
8RDV|1|Z2|A|1604
8RDV|1|Z2|C|1605
8RDV|1|Z2|A|1606
8RDV|1|Z2|G|1607

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain Ba

Large ribosomal subunit protein bL34

Chain RF

Large ribosomal subunit protein uL22