HL_8RDV_052

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

8RDV|1|Z2|A|2016, 8RDV|1|Z2|A|2017, 8RDV|1|Z2|G|2018

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RDV_052 not in the Motif Atlas

Homologous match to HL_4WF9_047

Geometric discrepancy: 0.113

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

10

Unit IDs

8RDV|1|Z2|G|2013
8RDV|1|Z2|U|2014
8RDV|1|Z2|G|2015
8RDV|1|Z2|A|2016
8RDV|1|Z2|A|2017
8RDV|1|Z2|G|2018
8RDV|1|Z2|A|2019
8RDV|1|Z2|U|2020
8RDV|1|Z2|G|2021
8RDV|1|Z2|C|2022

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain Af

Large ribosomal subunit protein uL3

Chain Qb

Large ribosomal subunit protein bL21

Chain aA

Large ribosomal subunit protein bL32