HL_8RDV_055
3D structure
- PDB id
- 8RDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CUGGGGCGG
- Length
- 9 nucleotides
- Bulged bases
- 8RDV|1|Z2|G|2233
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8RDV_055 not in the Motif Atlas
- Homologous match to HL_7RQB_053
- Geometric discrepancy: 0.0771
- The information below is about HL_7RQB_053
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8RDV|1|Z2|C|2231
8RDV|1|Z2|U|2232
8RDV|1|Z2|G|2233
8RDV|1|Z2|G|2234
8RDV|1|Z2|G|2235
8RDV|1|Z2|G|2236
8RDV|1|Z2|C|2237
8RDV|1|Z2|G|2238
8RDV|1|Z2|G|2239
Current chains
- Chain Z2
- 23S rRNA
Nearby chains
- Chain B
- Methyl-accepting chemotaxis protein
- Chain Lg
- Large ribosomal subunit protein uL16
- Chain V
- Heterogenous tRNA
- Chain VH
- Large ribosomal subunit protein bL27
Coloring options: