HL_8RDV_062

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

AGUUCAUAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RDV_062 not in the Motif Atlas

Homologous match to HL_5J7L_193

Geometric discrepancy: 0.1433

The information below is about HL_5J7L_193

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32735.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8RDV|1|Z2|A|2454
8RDV|1|Z2|G|2455
8RDV|1|Z2|U|2456
8RDV|1|Z2|U|2457
8RDV|1|Z2|C|2458
8RDV|1|Z2|A|2459
8RDV|1|Z2|U|2460
8RDV|1|Z2|A|2461
8RDV|1|Z2|U|2462

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain B

Methyl-accepting chemotaxis protein

Chain GR

Large ribosomal subunit protein uL6

Chain ep

Large ribosomal subunit protein bL36