HL_8RDV_067

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGCCAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RDV_067 not in the Motif Atlas

Homologous match to HL_5J7L_198

Geometric discrepancy: 0.1218

The information below is about HL_5J7L_198

Detailed Annotation

Ribsomal LSU H95

Broad Annotation

Ribsomal LSU H95

Motif group

HL_65794.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

14

Unit IDs

8RDV|1|Z2|C|2684
8RDV|1|Z2|G|2685
8RDV|1|Z2|C|2686
8RDV|1|Z2|C|2687
8RDV|1|Z2|A|2688
8RDV|1|Z2|G|2689

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain MB

Large ribosomal subunit protein bL17