HL_8RDV_069

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GAAGACUAC

Length

9 nucleotides

Bulged bases

8RDV|1|Z2|A|2786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RDV_069 not in the Motif Atlas

Homologous match to HL_7RQB_068

Geometric discrepancy: 0.1233

The information below is about HL_7RQB_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.1

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8RDV|1|Z2|G|2785
8RDV|1|Z2|A|2786
8RDV|1|Z2|A|2787
8RDV|1|Z2|G|2788
8RDV|1|Z2|A|2789
8RDV|1|Z2|C|2790
8RDV|1|Z2|U|2791
8RDV|1|Z2|A|2792
8RDV|1|Z2|C|2793

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain Af

Large ribosomal subunit protein uL3

Chain MB

Large ribosomal subunit protein bL17