HL_8RDV_071

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UUUGAUCAUGG

Length

11 nucleotides

Bulged bases

8RDV|1|iN|U|61

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RDV_071 not in the Motif Atlas

Homologous match to HL_5J7L_001

Geometric discrepancy: 0.0613

The information below is about HL_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89881.5

Basepair signature

cWW-tHW-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8RDV|1|iN|U|59
8RDV|1|iN|U|60
8RDV|1|iN|U|61
8RDV|1|iN|G|62
8RDV|1|iN|A|63
8RDV|1|iN|U|64
8RDV|1|iN|C|65
8RDV|1|iN|A|66
8RDV|1|iN|U|67
8RDV|1|iN|G|68
8RDV|1|iN|G|69

Current chains

Chain iN

16S rRNA

Nearby chains

Chain E5

Small ribosomal subunit protein uS5

Chain L6

Small ribosomal subunit protein uS12