HL_8RDV_074

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

8RDV|1|iN|A|233

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RDV_074 not in the Motif Atlas

Geometric match to HL_5U3G_001

Geometric discrepancy: 0.2876

The information below is about HL_5U3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

8RDV|1|iN|C|231
8RDV|1|iN|U|232
8RDV|1|iN|A|233
8RDV|1|iN|C|234
8RDV|1|iN|G|235
8RDV|1|iN|G|236

Current chains

Chain iN

16S rRNA

Nearby chains

Chain To

Small ribosomal subunit protein bS20