HL_8RDV_078

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

8RDV|1|iN|A|387

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RDV_078 not in the Motif Atlas

Homologous match to HL_4LFB_009

Geometric discrepancy: 0.107

The information below is about HL_4LFB_009

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

49

Unit IDs

8RDV|1|iN|C|385
8RDV|1|iN|U|386
8RDV|1|iN|A|387
8RDV|1|iN|C|388
8RDV|1|iN|G|389
8RDV|1|iN|G|390

Current chains

Chain iN

16S rRNA

Nearby chains

Chain H

Elongation factor Tu

Chain Je

Large ribosomal subunit protein uL14

Chain Oi

Large ribosomal subunit protein bL19