HL_8RDV_081

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

8RDV|1|iN|U|510

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RDV_081 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.1263

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8RDV|1|iN|G|505
8RDV|1|iN|U|506
8RDV|1|iN|U|507
8RDV|1|iN|A|508
8RDV|1|iN|A|509
8RDV|1|iN|U|510
8RDV|1|iN|A|511
8RDV|1|iN|C|512
8RDV|1|iN|C|513

Current chains

Chain iN

16S rRNA

Nearby chains