HL_8RDV_087

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUAACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RDV_087 not in the Motif Atlas

Homologous match to HL_4LFB_019

Geometric discrepancy: 0.0588

The information below is about HL_4LFB_019

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

8RDV|1|iN|C|906
8RDV|1|iN|U|907
8RDV|1|iN|A|908
8RDV|1|iN|A|909
8RDV|1|iN|C|910
8RDV|1|iN|G|911

Current chains

Chain iN

16S rRNA

Nearby chains

Chain BQ

Small ribosomal subunit protein uS8

Chain E5

Small ribosomal subunit protein uS5