HL_8RDV_097

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUGCAACUCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RDV_097 not in the Motif Atlas

Homologous match to HL_4LFB_029

Geometric discrepancy: 0.0861

The information below is about HL_4LFB_029

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_93658.1

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8RDV|1|iN|C|1359
8RDV|1|iN|U|1360
8RDV|1|iN|G|1361
8RDV|1|iN|C|1362
8RDV|1|iN|A|1363
8RDV|1|iN|A|1364
8RDV|1|iN|C|1365
8RDV|1|iN|U|1366
8RDV|1|iN|C|1367
8RDV|1|iN|G|1368

Current chains

Chain iN

16S rRNA

Nearby chains

Chain HK

Small ribosomal subunit protein uS14

Chain MM

Small ribosomal subunit protein uS13

Chain SP

Small ribosomal subunit protein uS19