HL_8RDV_102

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

AAACUUGUUUU

Length

11 nucleotides

Bulged bases

8RDV|1|Z2|C|1157, 8RDV|1|Z2|U|1158, 8RDV|1|Z2|U|1159, 8RDV|1|Z2|G|1160, 8RDV|1|Z2|U|1161

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RDV|1|Z2|A|1154
8RDV|1|Z2|A|1155
8RDV|1|Z2|A|1156
8RDV|1|Z2|C|1157
8RDV|1|Z2|U|1158
8RDV|1|Z2|U|1159
8RDV|1|Z2|G|1160
8RDV|1|Z2|U|1161
8RDV|1|Z2|U|1162
8RDV|1|Z2|U|1163
8RDV|1|Z2|U|1164

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain Kd

Large ribosomal subunit protein uL15

Chain Qb

Large ribosomal subunit protein bL21