HL_8RDV_103

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UAACAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RDV_103 not in the Motif Atlas

Geometric match to HL_6UFM_005

Geometric discrepancy: 0.2212

The information below is about HL_6UFM_005

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_65794.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

14

Unit IDs

8RDV|1|Z2|U|2194
8RDV|1|Z2|A|2195
8RDV|1|Z2|A|2196
8RDV|1|Z2|C|2197
8RDV|1|Z2|A|2198
8RDV|1|Z2|A|2199

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain WD

Large ribosomal subunit protein bL28