HL_8RDW_007

3D structure

PDB id

8RDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.74 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

8RDW|1|Z2|A|193

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RDW_007 not in the Motif Atlas

Geometric match to HL_4WF9_006

Geometric discrepancy: 0.0936

The information below is about HL_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

24

Unit IDs

8RDW|1|Z2|G|191
8RDW|1|Z2|A|192
8RDW|1|Z2|A|193
8RDW|1|Z2|A|194
8RDW|1|Z2|C|195
8RDW|1|Z2|A|196
8RDW|1|Z2|U|197
8RDW|1|Z2|C|198

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain Kd

Large ribosomal subunit protein uL15

Chain WD

Large ribosomal subunit protein bL28