HL_8RDW_027

3D structure

PDB id

8RDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.74 Å

Loop

Sequence

UGCUAACG

Length

8 nucleotides

Bulged bases

8RDW|1|Z2|U|942, 8RDW|1|Z2|C|945

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RDW_027 not in the Motif Atlas

Homologous match to HL_4WF9_027

Geometric discrepancy: 0.1074

The information below is about HL_4WF9_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

8RDW|1|Z2|U|939
8RDW|1|Z2|G|940
8RDW|1|Z2|C|941
8RDW|1|Z2|U|942
8RDW|1|Z2|A|943
8RDW|1|Z2|A|944
8RDW|1|Z2|C|945
8RDW|1|Z2|G|946

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain D8

5S ribosomal RNA; 5S rRNA

Chain Lg

Large ribosomal subunit protein uL16